recipe vcfkit

VCF-kit is a command-line based collection of utilities for performing analysis on Variant Call Format (VCF) files.

Homepage

https://github.com/AndersenLab/VCF-kit

License

MIT / MIT

Recipe

/vcfkit/meta.yaml

package vcfkit

Versions

0.1.6-3, 0.1.6-2, 0.1.6-0, 0.0.4-0

Depends

• awesome-slugify

• bcftools >=1.3

• biopython

• blast >=2.2.31

• bwa >=0.7.12

• clint

• cyvcf2 >=0.6.5

• docopt

• intervaltree 2.1.0

• jinja2

• libgcc-ng >=7.3.0

• matplotlib

• muscle >=3.8.31

• networkx 1.11

• numpy

• python >=2.7,<2.8.0a0

• requests

• samtools >=1.3

• scipy

• tabulate

• yahmm >=1.1.2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install vcfkit

and update with:

conda update vcfkit

or use the docker container:

docker pull quay.io/biocontainers/vcfkit:<tag>

(see vcfkit/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/vcfkit/README.html)