recipe vcfkit

Assorted utilities for the variant call format

Homepage

https://github.com/AndersenLab/VCF-kit

License

MIT / MIT License

Recipe

/vcfkit/meta.yaml

package vcfkit

Versions

0.1.6-2, 0.1.6-0, 0.0.4-0

Depends

• awesome-slugify

• biopython

• clint

• cython

• cyvcf2 >=0.1.9

• docopt

• intervaltree

• jinja2

• matplotlib

• numpy

• pytest-runner

• python >=2.7,<2.8.0a0

• requests

• scipy

• tabulate

• yahmm

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install vcfkit

and update with:

conda update vcfkit

or use the docker container:

docker pull quay.io/biocontainers/vcfkit:<tag>

(see vcfkit/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/vcfkit/README.html)