recipe vcflib

Command-line tools for manipulating VCF files

Homepage:

https://github.com/vcflib/vcflib

License:

MIT

Recipe:

/vcflib/meta.yaml

Links:

biotools: vcflib, doi: 10.1101/023754

package vcflib

Versions:

1.0.3-4,  1.0.3-3,  1.0.3-2,  1.0.3-1,  1.0.3-0,  1.0.2-6,  1.0.2-5,  1.0.2-4,  1.0.2-3, 

1.0.3-4,  1.0.3-3,  1.0.3-2,  1.0.3-1,  1.0.3-0,  1.0.2-6,  1.0.2-5,  1.0.2-4,  1.0.2-3,  1.0.2-2,  1.0.2-1,  1.0.2-0,  1.0.1-1,  1.0.0_rc3-0,  1.0.0_rc2-2,  1.0.0_rc2-1,  1.0.0_rc2-0,  1.0.0_rc1-3,  1.0.0_rc1-1,  1.0.0_rc1-0,  1.0.0_rc0-0

Depends:

• htslib >=1.17,<1.18.0a0

• libgcc-ng >=12

• libstdcxx-ng >=12

• python >=3

• tabixpp

• zlib

Required By:

• sensv

• snippy

• nanocaller

• cluster_vcf_records

• vsnp3

• ssuissero

• pathogist

• lrtk

• viralflye

• freebayes

• clair

• ddocent

• vsnp

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install vcflib

and update with:

conda update vcflib

or use the docker container:

docker pull quay.io/biocontainers/vcflib:<tag>

(see vcflib/tags for valid values for <tag>)

Download stats

Link to this page

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