recipe vcfx

VCFX: A Comprehensive VCF Manipulation Toolkit

Homepage:

https://github.com/jorgeMFS/VCFX

Documentation:

https://jorgeMFS.github.io/VCFX/

License:

MIT

Recipe:

/vcfx/meta.yaml

VCFX is a collection of specialized command-line tools designed for efficient manipulation, analysis, and transformation of VCF (Variant Call Format) files used in genomic research and bioinformatics. The toolkit follows the Unix philosophy, creating small, focused tools that do one thing well and can be combined into powerful workflows.

package vcfx

(downloads) docker_vcfx

versions:

1.0.2-0

depends bzip2:

>=1.0.8,<2.0a0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends zlib:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install vcfx

and update with::

   mamba update vcfx

To create a new environment, run:

mamba create --name myenvname vcfx

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/vcfx:<tag>

(see `vcfx/tags`_ for valid values for ``<tag>``)

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Link to this page

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