recipe vibrant

Virus Identification By iteRative ANnoTation

Homepage

https://github.com/AnantharamanLab/VIBRANT

License

GPL / GPL-3.0

Recipe

/vibrant/meta.yaml

Links

doi: 10.1101/855387

package vibrant

Versions

1.2.1-1,  1.2.1-0,  1.2.0-2,  1.2.0-1,  1.2.0-0,  1.0.1-2,  1.0.1-1,  1.0.1-0

Depends

• biopython

• hmmer >=3.2.1

• matplotlib-base

• numpy >=1.17.0

• pandas <1

• prodigal

• python >=3.5

• scikit-learn 0.21.3.*

• seaborn

• wget

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install vibrant

and update with:

conda update vibrant

or use the docker container:

docker pull quay.io/biocontainers/vibrant:<tag>

(see vibrant/tags for valid values for <tag>)

Notes

Read post-link.sh on how to download 11GB required data files.

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/vibrant/README.html)