recipe vine-phylo

VINE (phylogenetics): Variational Inference with Node Embeddings

Homepage:

https://github.com/CshlSiepelLab/vine

License:

BSD-3-Clause

Recipe:

/vine-phylo/meta.yaml

VINE is a tool for Bayesian variational phylogenetic inference.

package vine-phylo

versions:

0.3.3-0

depends libgcc:

>=14

depends pcre:

>=8.45,<9.0a0

depends phast:

>=1.9.7,<2.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install vine-phylo

and update with::

   mamba update vine-phylo

To create a new environment, run:

mamba create --name myenvname vine-phylo

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/vine-phylo:<tag>

(see `vine-phylo/tags`_ for valid values for ``<tag>``)

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