recipe virmet

A pipeline for viral metagenomics

Homepage

http://virmet.readthedocs.io

Developer docs

https://github.com/ozagordi/VirMet

License

MIT / MIT

Recipe

/virmet/meta.yaml

package virmet

Versions

1.1.1-0,  v1.1.1-5,  v1.1.1-4,  v1.1.1-3,  v1.1.1-2,  v1.1.1-1,  v1.1.1-0,  v1.1-2,  v1.1-1, 

1.1.1-0,  v1.1.1-5,  v1.1.1-4,  v1.1.1-3,  v1.1.1-2,  v1.1.1-1,  v1.1.1-0,  v1.1-2,  v1.1-1,  v1.1-0,  v1.0-0

Depends

• biopython

• blast >=2.3

• bwa

• entrez-direct

• htslib

• pandas

• prinseq

• python >=3

• r-ggplot2

• samtools >=1.3

• seqtk

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install virmet

and update with:

conda update virmet

or use the docker container:

docker pull quay.io/biocontainers/virmet:<tag>

(see virmet/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/virmet/README.html)