recipe vpt-core

Core components for the Vizgen Post-processing Tool

Homepage:

https://github.com/Vizgen/vpt-core

License:

Apache-2.0

Recipe:

/vpt-core/meta.yaml

package vpt-core

versions:

1.2.0-0

depends boto3:

>=1.17

depends fsspec:

>=2021.10.0

depends gcsfs:

>=2021.10.0

depends geopandas:

>=0.13.2

depends geos:

>=3.10.2

depends numpy:

depends opencv-python-headless:

depends pandas:

>=2.0.3,<3.0.0

depends pillow:

>=9.4.0

depends psutil:

depends pyarrow:

>=8.0.0,<14.0.0

depends python:

>=3.9,<3.11

depends python-dotenv:

>=0.20.0

depends rasterio:

depends s3fs:

>=2021.10.0

depends scikit-image:

>=0.19.3

depends shapely:

depends tenacity:

>=8.2.2

depends tqdm:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install vpt-core

and update with::

   mamba update vpt-core

To create a new environment, run:

mamba create --name myenvname vpt-core

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/vpt-core:<tag>

(see `vpt-core/tags`_ for valid values for ``<tag>``)

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Link to this page

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