recipe vrhyme

Binning Virus Genomes from Metagenomes.

Homepage:

https://github.com/AnantharamanLab/vRhyme

License:

GPL / GPL-3.0

Recipe:

/vrhyme/meta.yaml

Links:

doi: 10.1093/nar/gkac341

package vrhyme

versions:

1.1.0-1,  1.1.0-0

depends bowtie2:

depends bwa:

depends mash:

depends mmseqs2:

depends networkx:

depends numba:

depends numpy:

depends pandas:

depends prodigal:

depends pysam:

depends python:

>=3.6

depends samtools:

depends scikit-learn:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install vrhyme

and update with::

   mamba update vrhyme

To create a new environment, run:

mamba create --name myenvname vrhyme

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/vrhyme:<tag>

(see `vrhyme/tags`_ for valid values for ``<tag>``)

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