recipe vsclust

Interactive tool for statistical testing, data browsing and interactive visualizationc of quantitative omics data

Homepage

https://bitbucket.org/veitveit/vsclust/src/master/

License

GPL / GPL (>=2)

Recipe

/vsclust/meta.yaml

Links

biotools: vsclust, doi: 10.1093/bioinformatics/bty224

VSClust is a web service (shiny app) and command-line tool for statistical testing, clustering and interactive visualization of quantitative omics data. Its variance-sensitive clustering algorithm improves identification of co-regulated features in noisy data with replicates

package vsclust

(downloads) docker_vsclust

Versions

0.87-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install vsclust

and update with:

conda update vsclust

or use the docker container:

docker pull quay.io/biocontainers/vsclust:<tag>

(see vsclust/tags for valid values for <tag>)

Notes

The shiny app can be run with the run_vsclust_app.sh command. Alternatively, a command-line version is available: runVSClust.R