recipe vsearch

a versatile open source tool for metagenomics (USEARCH alternative)

Homepage

https://github.com/torognes/vsearch

License

GPL / dual-licensed under GPL-3.0+ or BSD 2-clause

Recipe

/vsearch/meta.yaml

Links

biotools: vsearch, doi: 10.7717/peerj.2584

package vsearch

(downloads) docker_vsearch

Versions

2.13.4-4, 2.13.4-0, 2.13.3-0, 2.13.1-0, 2.13.0-0, 2.11.1-0, 2.10.4-1, 2.10.4-0, 2.10.3-0, 2.10.2-0, 2.10.1-0, 2.10.0-0, 2.9.1-0, 2.9.0-0, 2.8.5-0, 2.8.3-0, 2.8.2-0, 2.8.1-0, 2.8.0-1, 2.8.0-0, 2.7.0-1, 2.7.0-0, 2.6.0-1, 2.6.0-0, 2.5.0-0, 2.4.4-0, 2.4.3-0, 2.4.0-0, 2.3.4-0, 2.3.2-0, 2.0.3-1, 2.0.3-0, 2.0.2-0, 2.0.0-0, 1.11.1-0, 1.10.2-0, 1.9.7-0, 1.9.5-0, 1.1.3-0

Depends
  • bzip2 >=1.0.6,<2.0a0

  • libgcc-ng >=7.3.0

  • libstdcxx-ng >=7.3.0

  • zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install vsearch

and update with:

conda update vsearch

or use the docker container:

docker pull quay.io/biocontainers/vsearch:<tag>

(see vsearch/tags for valid values for <tag>)