- recipe vsnp3
Rapidly call, validate, and compare SNPs from FASTQ files in a timely manner utilizing large data sets.
- Homepage:
- License:
GPL3
- Recipe:
- package vsnp3¶
-
- Versions:
3.14-0
,3.13-0
,3.12-0
,3.11-0
,3.10-0
,3.09-0
,3.08-0
,3.07-0
,3.06-0
,3.14-0
,3.13-0
,3.12-0
,3.11-0
,3.10-0
,3.09-0
,3.08-0
,3.07-0
,3.06-0
,3.05-0
,3.04-0
,3.02-0
,3.01-0
- Depends:
biopython
>=1.79
cairosvg
>=2.5.2
dask
>=2022.01.1
freebayes
>=1.3.5
humanize
>=3.14.0
minimap2
>=2.24
numpy
>=1.21,<=1.23
openpyxl
>=3.0.9
pandas
>=1.4.0,<2.0
python
>=3.7
raxml
>=8.2.12
regex
>=2.5.110
samtools
>=1.14
scikit-allel
>=1.3.5
seqkit
>=2.1.0
sourmash
>=4.2.4
spades
>=3.15.2
svgwrite
>=1.4.1
xlsxwriter
>=3.0.2
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install vsnp3
and update with:
conda update vsnp3
or use the docker container:
docker pull quay.io/biocontainers/vsnp3:<tag>
(see vsnp3/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/vsnp3/README.html)