recipe vuegen

VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications. Users simply provide a directory with output files—such as plots, tables, networks, Markdown text, and HTML files—and VueGen compiles them into a structured report.

Homepage:

https://github.com/Multiomics-Analytics-Group/vuegen

Documentation:

https://vuegen.readthedocs.io

License:

MIT / MIT

Recipe:

/vuegen/meta.yaml

package vuegen

versions:

0.2.2-1,  0.2.2-0

depends altair:

depends dataframe_image:

depends itables:

>=2.2.2,<3.0.0

depends matplotlib-base:

>=3.9.2,<4.0.0

depends nbclient:

>=0.10.0,<0.11.0

depends nbformat:

>=5.10.4,<6.0.0

depends openpyxl:

>=3.1.5,<4.0.0

depends pandas:

>=2.2.3,<3.0.0

depends plotly:

5.15.0.*

depends python:

>=3.9,<3.9.7|>3.9.7,<4.0

depends python-kaleido:

0.2.0.*

depends pyvis:

>=0.3.2,<0.4.0

depends pyyaml:

>=6.0.2,<7.0.0

depends quarto:

depends streamlit:

1.39.0.*

depends streamlit-aggrid:

depends vl-convert-python:

>=1.7.0,<2.0.0

depends xlrd:

>=2.0.1,<3.0.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install vuegen

and update with::

   mamba update vuegen

To create a new environment, run:

mamba create --name myenvname vuegen

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/vuegen:<tag>

(see `vuegen/tags`_ for valid values for ``<tag>``)

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