recipe whatshap

phase genomic variants using DNA sequencing reads (haplotype assembly)

Homepage

https://whatshap.readthedocs.io/

License

MIT License

Recipe

/whatshap/meta.yaml

Links

biotools: whatshap, doi: 10.1089/cmb.2014.0157

package whatshap

Versions

1.4-0,  1.3-1,  1.3-0,  1.2.1-1,  1.2.1-0,  1.1-1,  1.1-0,  1.0-1,  1.0-0, 

1.4-0,  1.3-1,  1.3-0,  1.2.1-1,  1.2.1-0,  1.1-1,  1.1-0,  1.0-1,  1.0-0,  0.18-0,  0.17-0,  0.16-0,  0.15-0,  0.14.1-0,  0.13-0,  0.12-0,  0.11-0,  0.9-0

Depends

• biopython >=1.73

• htslib

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• networkx >=2.4

• pyfaidx >=0.5.5.2

• pysam >=0.17

• python >=3.7,<3.8.0a0

• python_abi 3.7.* *_cp37m

• scipy

• setuptools

• xopen >=1.2.0

Required By

• clair3

• clair3-trio

• medaka

• nanocaller

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install whatshap

and update with:

conda update whatshap

or use the docker container:

docker pull quay.io/biocontainers/whatshap:<tag>

(see whatshap/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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