Package Recipe 'whatshap'

recipe whatshap¶

phase genomic variants using DNA sequencing reads (haplotype assembly)

Homepage: https://whatshap.readthedocs.io/
License: MIT License
Recipe: /whatshap/meta.yaml

package whatshap¶

Versions

0.18-0, 0.17-0, 0.16-0, 0.15-0, 0.14.1-0, 0.13-0, 0.12-0, 0.11-0, 0.9-0

Depends

biopython >=1.73
libgcc-ng >=7.3.0
libstdcxx-ng >=7.3.0
networkx
pyfaidx >=0.5.5.2
pysam >=0.15
python >=3.6,<3.7.0a0
pyvcf
setuptools
xopen >=0.5.0

Required By

medaka

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install whatshap

and update with:

conda update whatshap

or use the docker container:

docker pull quay.io/biocontainers/whatshap:<tag>

(see whatshap/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/whatshap/README.html)