recipe whatshap

phase genomic variants using DNA sequencing reads (haplotype assembly)

Homepage:

https://whatshap.readthedocs.io/

License:

MIT License

Recipe:

/whatshap/meta.yaml

Links:

biotools: whatshap, doi: 10.1089/cmb.2014.0157

package whatshap

Versions:

1.7-0,  1.6-1,  1.6-0,  1.5-0,  1.4-1,  1.4-0,  1.3-1,  1.3-0,  1.2.1-1, 

1.7-0,  1.6-1,  1.6-0,  1.5-0,  1.4-1,  1.4-0,  1.3-1,  1.3-0,  1.2.1-1,  1.2.1-0,  1.1-1,  1.1-0,  1.0-1,  1.0-0,  0.18-0,  0.17-0,  0.16-0,  0.15-0,  0.14.1-0,  0.13-0,  0.12-0,  0.11-0,  0.9-0

Depends:

• biopython >=1.73

• htslib

• libgcc-ng >=12

• libstdcxx-ng >=12

• networkx >=2.4

• pulp >=2

• pyfaidx >=0.5.5.2

• pysam >=0.17

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• scipy

• xopen >=1.2.0

Required By:

• lrtk

• clair3-trio

• clair3

• nanocaller

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install whatshap

and update with:

conda update whatshap

or use the docker container:

docker pull quay.io/biocontainers/whatshap:<tag>

(see whatshap/tags for valid values for <tag>)

Download stats

Link to this page

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