- recipe whatshap
phase genomic variants using DNA sequencing reads (haplotype assembly)
- Homepage
- License
MIT License
- Recipe
- Links
biotools: whatshap, doi: 10.1089/cmb.2014.0157
- package whatshap¶
-
- Versions
1.4-0
,1.3-1
,1.3-0
,1.2.1-1
,1.2.1-0
,1.1-1
,1.1-0
,1.0-1
,1.0-0
,1.4-0
,1.3-1
,1.3-0
,1.2.1-1
,1.2.1-0
,1.1-1
,1.1-0
,1.0-1
,1.0-0
,0.18-0
,0.17-0
,0.16-0
,0.15-0
,0.14.1-0
,0.13-0
,0.12-0
,0.11-0
,0.9-0
- Depends
biopython
>=1.73
libgcc-ng
>=10.3.0
libstdcxx-ng
>=10.3.0
networkx
>=2.4
pyfaidx
>=0.5.5.2
pysam
>=0.17
python
>=3.7,<3.8.0a0
python_abi
3.7.* *_cp37m
xopen
>=1.2.0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install whatshap
and update with:
conda update whatshap
or use the docker container:
docker pull quay.io/biocontainers/whatshap:<tag>
(see whatshap/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/whatshap/README.html)