recipe winnowmap

Winnowmap is a long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences.

Homepage:

https://github.com/marbl/Winnowmap

License:

LicenseRef-Public-Domain AND MIT

Recipe:

/winnowmap/meta.yaml

Links:

doi: 10.1093/bioinformatics/btaa435

package winnowmap

Versions:

2.03-1,  2.03-0,  2.02-0,  2.01-0,  2.0-1,  2.0-0

Depends:

• _openmp_mutex >=4.5

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

• meryl >=1.2,<2013

Required By:

• dipcall

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install winnowmap

and update with:

conda update winnowmap

or use the docker container:

docker pull quay.io/biocontainers/winnowmap:<tag>

(see winnowmap/tags for valid values for <tag>)

Download stats

Link to this page

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