recipe wisecondorx

WIthin-SamplE COpy Number aberration DetectOR, including sex chromosomes

Homepage:

https://github.com/CenterForMedicalGeneticsGhent/wisecondorX

License:

Attribution-NonCommercial-ShareAlike CC BY-NC-SA

Recipe:

/wisecondorx/meta.yaml

package wisecondorx

(downloads) docker_wisecondorx

versions:
1.2.9-0,  1.2.8-0,  1.2.7-0,  1.2.6-0,  1.2.5-0,  1.2.4-0,  1.2.2-0,  1.2.0-0,  1.1.5-1, 

1.2.9-0,  1.2.8-0,  1.2.7-0,  1.2.6-0,  1.2.5-0,  1.2.4-0,  1.2.2-0,  1.2.0-0,  1.1.5-1,  1.1.5-0,  1.1.0-2,  1.1.0-1,  1.1.0-0,  1.0.2-0,  1.0.1-0,  1.0.0-0,  0.2.1-0,  0.2.0-1,  0.1.0-2,  0.1.0-1,  0.1.0-0

depends bioconductor-dnacopy:

1.76

depends matplotlib-base:

3.8.4

depends numpy:

1.26

depends pandas:

depends pysam:

0.22

depends python:

>=3.6

depends r-jsonlite:

1.8.8

depends r-png:

depends scikit-learn:

1.4

depends scipy:

1.13

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install wisecondorx

and update with::

   mamba update wisecondorx

To create a new environment, run:

mamba create --name myenvname wisecondorx

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/wisecondorx:<tag>

(see `wisecondorx/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/wisecondorx/README.html)