recipe xtandem

X! Tandem open source is software that can match tandem mass spectra with peptide sequences, in a process that has come to be known as protein identification.

Homepage:

https://www.thegpm.org/TANDEM/index.html

License:

The-Artistic-License

Recipe:

/xtandem/meta.yaml

Links:

biotools: xtandem, doi: 10.1093/bioinformatics/bth092

package xtandem

(downloads) docker_xtandem

versions:
15.12.15.2-11,  15.12.15.2-10,  15.12.15.2-9,  15.12.15.2-8,  15.12.15.2-7,  15.12.15.2-6,  15.12.15.2-5,  15.12.15.2-4,  15.12.15.2-3, 

15.12.15.2-11,  15.12.15.2-10,  15.12.15.2-9,  15.12.15.2-8,  15.12.15.2-7,  15.12.15.2-6,  15.12.15.2-5,  15.12.15.2-4,  15.12.15.2-3,  15.12.15.2-2,  15.12.15.2-1,  15.12.15.2-0

depends expat:

depends libexpat:

>=2.7.0,<3.0a0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install xtandem

and update with::

   mamba update xtandem

To create a new environment, run:

mamba create --name myenvname xtandem

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/xtandem:<tag>

(see `xtandem/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/xtandem/README.html)