recipe xtea

TE insertion caller for both short and long reads

Homepage

https://github.com/parklab/xTea

License

AGPL-3.0-only

Recipe

/xtea/meta.yaml

package xtea

Versions

0.1.7-0,  0.1.6-0,  0.1.5-0,  0.1.4-0,  0.1.3-0,  0.1.2-0

Depends

• bwa >=0.7.17

• minimap2

• numpy

• pandas

• pysam >=0.15.0

• python

• samtools >=1.0

• scikit-learn 0.20.0

• sortedcontainers

• wtdbg

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install xtea

and update with:

conda update xtea

or use the docker container:

docker pull quay.io/biocontainers/xtea:<tag>

(see xtea/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/xtea/README.html)