recipe zipstrain

Fast strain-level metagenomics

Homepage:

https://github.com/OlmLab/ZipStrain

License:

MIT / MIT

Recipe:

/zipstrain/meta.yaml

package zipstrain

versions:

0.1.7-0

depends aiofiles:

depends click:

depends intervaltree:

depends numpy:

depends plotly:

depends polars:

depends psutil:

depends pyarrow:

depends pydantic:

depends python:

>=3.12

depends rich:

depends samtools:

depends scipy:

depends seaborn:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install zipstrain

and update with::

   mamba update zipstrain

To create a new environment, run:

mamba create --name myenvname zipstrain

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/zipstrain:<tag>

(see `zipstrain/tags`_ for valid values for ``<tag>``)

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