- recipe a5-miseq
A5-miseq is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you through the steps necessary for running _A5-miseq_
- package a5-miseq¶
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install a5-miseq and update with:: mamba update a5-miseq
To create a new environment, run:
mamba create --name myenvname a5-miseq
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/a5-miseq:<tag> (see `a5-miseq/tags`_ for valid values for ``<tag>``)