Tutorials

• Adding bioinformatic software to Bioconda - a reference guide
  • Check before starting
  • TL;DR Relevant Commands
  • Setup
  • Writing the recipe
  • Writing a build script (optional)
  • Build testing
  • Opening the Pull Request
  • Test driving the docker Biocontainer (optional)
  • Finalising the PR
  • Conclusion
• Updating bioinformatic software to Bioconda - a reference guide
  • Prerequisite
  • Updating the Bioconda recipe
  • Conclusion
• Debugging a Bioconda build - a reference guide
  • Prerequisite
  • With conda-build
  • With bioconda-utils
  • It’s still not working!
  • Conclusion
• GCB 2020 Tutorial
  • What exactly is Conda?
  • Conda packages
  • Conda channels
  • Finding Packages
  • Practical 1
  • Conda environments
  • Conda environments
  • Conda environments – common commands
  • Introducing mamba
  • Practical 2
  • Conda environments – common commands
  • Common pitfalls
  • Conda package recipes
  • meta.yaml sections
  • Don’t fear skeletons
  • Practical 3
  • Common problems
  • Practical 4 and/or Q&A