recipe abeona

A simple transcriptome assembler based on kallisto and Cortex graphs.

Homepage

https://github.com/winni2k/abeona

License

Apache / Apache Software

Recipe

/abeona/meta.yaml

package abeona

Versions

0.45.0-1, 0.45.0-0, 0.44.3-0, 0.44.0-0, 0.43.0-0, 0.42.1-0, 0.42.0-0, 0.41.1-0, 0.40.2-0, 0.40.0-0, 0.39.3-0, 0.37.2-0, 0.36.0-2, 0.36.0-1, 0.36.0-0, 0.31.2-0, 0.26.0-0, 0.24.0-2, 0.23.1-2, 0.23.1-0, 0.23.0-1, 0.23.0-0

Depends

• bwa

• cortexpy 0.45.7

• kallisto 0.44.0

• mccortex 1.0

• nextflow 19.01.0

• pandas

• progressbar2

• python >=3.6

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install abeona

and update with:

conda update abeona

or use the docker container:

docker pull quay.io/biocontainers/abeona:<tag>

(see abeona/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/abeona/README.html)