recipe abyss

Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler

Homepage

http://www.bcgsc.ca/platform/bioinfo/software/abyss

Documentation

https://github.com/bcgsc/abyss#readme

Developer docs

https://github.com/bcgsc/abyss

License

GPL3

Recipe

/abyss/meta.yaml

Links

biotools: abyss, doi: 10.1101/gr.214346.116, doi: 10.1101/gr.089532.108

package abyss

Versions

2.2.4-0, 2.2.3-2, 2.2.3-1, 2.2.3-0, 2.2.2-0, 2.2.1-0, 2.1.5-1, 2.1.5-0, 2.1.4-0, 2.1.3-0, 2.1.1-0, 2.1.0-0, 2.0.2-5, 2.0.2-4, 2.0.2-3, 2.0.2-2, 2.0.2-1, 2.0.2-0, 2.0.1-2, 2.0.1-1, 2.0.1-0, 1.9.0-7, 1.9.0-6, 1.9.0-5, 1.9.0-4, 1.9.0-3, 1.9.0-2, 1.9.0-1, 1.9.0-0, 1.5.2-5, 1.5.2-4, 1.5.2-3, 1.5.2-2, 1.5.2-1, 1.5.2-0

Depends

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• make

• openmpi >=4.0.2,<4.1.0a0

• util-linux

Required By

• intemap

• vsnp

• secapr

• pgcgap

• transabyss

• phyluce

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install abyss

and update with:

conda update abyss

or use the docker container:

docker pull quay.io/biocontainers/abyss:<tag>

(see abyss/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/abyss/README.html)