recipe abyss

Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler

Homepage

http://www.bcgsc.ca/platform/bioinfo/software/abyss

Documentation

https://github.com/bcgsc/abyss#readme

Developer docs

https://github.com/bcgsc/abyss

License

GPL3

Recipe

/abyss/meta.yaml

Links

biotools: abyss, doi: 10.1101/gr.214346.116, doi: 10.1101/gr.089532.108

package abyss

(downloads) docker_abyss

Versions
2.2.4-02.2.3-22.2.3-12.2.3-02.2.2-02.2.1-02.1.5-12.1.5-02.1.4-0

2.2.4-02.2.3-22.2.3-12.2.3-02.2.2-02.2.1-02.1.5-12.1.5-02.1.4-02.1.3-02.1.1-02.1.0-02.0.2-52.0.2-42.0.2-32.0.2-22.0.2-12.0.2-02.0.1-22.0.1-12.0.1-01.9.0-71.9.0-61.9.0-51.9.0-41.9.0-31.9.0-21.9.0-11.9.0-01.5.2-51.5.2-41.5.2-31.5.2-21.5.2-11.5.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install abyss

and update with:

conda update abyss

or use the docker container:

docker pull quay.io/biocontainers/abyss:<tag>

(see abyss/tags for valid values for <tag>)