recipe adapt

A package to efficiently design activity-informed nucleic acid diagnostics for viruses.

Homepage:

https://github.com/broadinstitute/adapt

License:

MIT / MIT

Recipe:

/adapt/meta.yaml

Links:

doi: 10.1101/2020.11.28.401877

package adapt

(downloads) docker_adapt

versions:

1.6.0-0,  1.4.1-0,  1.4.0-0,  1.3.0-1,  1.3.0-0,  1.2.0-0,  1.1.1-0

depends numpy:

>=1.18.2

depends python:

>=3

depends scipy:

>=1.4.1

depends tensorflow:

>=2.3.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install adapt

and update with::

   mamba update adapt

To create a new environment, run:

mamba create --name myenvname adapt

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/adapt:<tag>

(see `adapt/tags`_ for valid values for ``<tag>``)

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Link to this page

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