recipe adapterremoval

The AdapterRemoval v2 tool for merging and clipping reads.

Homepage:

https://github.com/MikkelSchubert/adapterremoval

License:

GPL3

Recipe:

/adapterremoval/meta.yaml

package adapterremoval

versions:

2.3.3-3,  2.3.3-2,  2.3.3-1,  2.3.3-0,  2.3.2-2,  2.3.2-1,  2.3.2-0,  2.3.1-1,  2.3.1-0, 

2.3.3-3,  2.3.3-2,  2.3.3-1,  2.3.3-0,  2.3.2-2,  2.3.2-1,  2.3.2-0,  2.3.1-1,  2.3.1-0,  2.3.0-0,  2.2.2-4,  2.2.2-3,  2.2.2-2

depends bzip2:

>=1.0.8,<2.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install adapterremoval

and update with::

   mamba update adapterremoval

To create a new environment, run:

mamba create --name myenvname adapterremoval

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/adapterremoval:<tag>

(see `adapterremoval/tags`_ for valid values for ``<tag>``)

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