recipe admixture

ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets.

Homepage:

http://www.genetics.ucla.edu/software/admixture/index.html

License:

Free for Academic Use

Recipe:

/admixture/meta.yaml

Links:

biotools: admixture, doi: 10.1101/gr.094052.109

package admixture

(downloads) docker_admixture

versions:

1.3.0-0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install admixture

and update with::

   mamba update admixture

To create a new environment, run:

mamba create --name myenvname admixture

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/admixture:<tag>

(see `admixture/tags`_ for valid values for ``<tag>``)

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Link to this page

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