recipe aegean

The AEGeAn Toolkit provides a bundle of software tools for evaluating gene structure annotations and genome organization. The software is implemented in C and Python.

Homepage:

https://github.com/BrendelGroup/AEGeAn

License:

ISC License

Recipe:

/aegean/meta.yaml

package aegean

(downloads) docker_aegean

versions:

0.16.0-4,  0.16.0-3,  0.16.0-2,  0.16.0-1,  0.16.0-0

depends cairo:

>=1.16.0,<2.0a0

depends genometools-genometools:

depends git:

depends libgcc-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends pango:

>=1.50.14,<2.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install aegean

and update with::

   mamba update aegean

To create a new environment, run:

mamba create --name myenvname aegean

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/aegean:<tag>

(see `aegean/tags`_ for valid values for ``<tag>``)

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Link to this page

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