recipe agat

Another Gff Analysis Toolkit (AGAT). Suite of tools to handle gene annotations in any GTF/GFF format.

Homepage:

https://github.com/NBISweden/AGAT

Documentation:

https://agat.readthedocs.io/en/latest/

License:

GPL / GPLv3

Recipe:

/agat/meta.yaml

AGAT has the power to check, fix, pad missing information (features/attributes) of any kind of GTF and GFF to create complete, sorted and standardised GTF/GFF formats. Over the years it has been enriched by many many tools to perform just about any tasks that is possible related to GTF/GFF format files (sanitizing, conversions, merging, modifying, filtering, FASTA sequence extraction, adding information, etc). Comparing to other methods AGAT is robust to even the most despicable GTF/GFF files.

package agat

Versions:

1.0.0-0,  0.9.2-2,  0.9.2-1,  0.9.2-0,  0.9.1-0,  0.9.0-0,  0.8.1-1,  0.8.1-0,  0.8.0-0, 

1.0.0-0,  0.9.2-2,  0.9.2-1,  0.9.2-0,  0.9.1-0,  0.9.0-0,  0.8.1-1,  0.8.1-0,  0.8.0-0,  0.6.2-0,  0.6.1-0,  0.6.0-0,  0.5.1-0,  0.5.0-0,  0.4.0-0,  0.3.0-0,  0.2.3-1,  0.2.3-0,  0.2.2-0,  0.2.1-0,  0.1.1-0,  0.1.0-0,  0.0.3-1,  0.0.3-0,  0.0.1-0

Depends:

• libdb

• perl >=5.32.1,<6.0a0 *_perl5

• perl-bioperl-core >=1.7.8

• perl-carp

• perl-clone

• perl-file-share

• perl-file-sharedir-install

• perl-graph

• perl-list-moreutils

• perl-lwp-protocol-https

• perl-lwp-simple >=6.39

• perl-moose

• perl-sort-naturally

• perl-term-progressbar

• perl-yaml

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install agat

and update with:

conda update agat

or use the docker container:

docker pull quay.io/biocontainers/agat:<tag>

(see agat/tags for valid values for <tag>)

Download stats

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