- recipe agat
Another Gff Analysis Toolkit (AGAT). Suite of tools to handle gene annotations in any GTF/GFF format.
GPL / GPLv3
AGAT has the power to check, fix, pad missing information (features/attributes) of any kind of GTF and GFF to create complete, sorted and standardised GTF/GFF formats. Over the years it has been enriched by many many tools to perform just about any tasks that is possible related to GTF/GFF format files (sanitizing, conversions, merging, modifying, filtering, FASTA sequence extraction, adding information, etc). Comparing to other methods AGAT is robust to even the most despicable GTF/GFF files.
- package agat¶
- Required By:
With an activated Bioconda channel (see set-up-channels), install with:
conda install agat
and update with:
conda update agat
or use the docker container:
docker pull quay.io/biocontainers/agat:<tag>
(see agat/tags for valid values for
Link to this page¶
Render an badge with the following MarkDown:
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