- recipe agat
Another Gff Analysis Toolkit (AGAT). Suite of tools to handle gene annotations in any GTF/GFF format.
- Homepage:
- Documentation:
- License:
GPL / GPLv3
- Recipe:
AGAT has the power to check, fix, pad missing information (features/attributes) of any kind of GTF and GFF to create complete, sorted and standardised GTF/GFF formats. Over the years it has been enriched by many many tools to perform just about any tasks that is possible related to GTF/GFF format files (sanitizing, conversions, merging, modifying, filtering, FASTA sequence extraction, adding information, etc). Comparing to other methods AGAT is robust to even the most despicable GTF/GFF files.
- package agat¶
-
- Versions:
1.0.0-0
,0.9.2-2
,0.9.2-1
,0.9.2-0
,0.9.1-0
,0.9.0-0
,0.8.1-1
,0.8.1-0
,0.8.0-0
,1.0.0-0
,0.9.2-2
,0.9.2-1
,0.9.2-0
,0.9.1-0
,0.9.0-0
,0.8.1-1
,0.8.1-0
,0.8.0-0
,0.6.2-0
,0.6.1-0
,0.6.0-0
,0.5.1-0
,0.5.0-0
,0.4.0-0
,0.3.0-0
,0.2.3-1
,0.2.3-0
,0.2.2-0
,0.2.1-0
,0.1.1-0
,0.1.0-0
,0.0.3-1
,0.0.3-0
,0.0.1-0
- Depends:
perl
>=5.32.1,<6.0a0 *_perl5
perl-bioperl-core
>=1.7.8
perl-lwp-simple
>=6.39
perl-moose
perl-yaml
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install agat
and update with:
conda update agat
or use the docker container:
docker pull quay.io/biocontainers/agat:<tag>
(see agat/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/agat/README.html)