recipe agat

Another Gff Analysis Toolkit (AGAT). Suite of tools to handle gene annotations in any GTF/GFF format.

Homepage:

https://github.com/NBISweden/AGAT

Documentation:

https://agat.readthedocs.io/en/latest/

License:

GPL / GPLv3

Recipe:

/agat/meta.yaml

AGAT has the power to check, fix, pad missing information (features/attributes) of any kind of GTF and GFF to create complete, sorted and standardised GTF/GFF formats. Over the years it has been enriched by many many tools to perform just about any tasks that is possible related to GTF/GFF format files (sanitizing, conversions, merging, modifying, filtering, FASTA sequence extraction, adding information, etc). Comparing to other methods AGAT is robust to even the most despicable GTF/GFF files.

package agat

(downloads) docker_agat

Versions:
1.0.0-00.9.2-20.9.2-10.9.2-00.9.1-00.9.0-00.8.1-10.8.1-00.8.0-0

1.0.0-00.9.2-20.9.2-10.9.2-00.9.1-00.9.0-00.8.1-10.8.1-00.8.0-00.6.2-00.6.1-00.6.0-00.5.1-00.5.0-00.4.0-00.3.0-00.2.3-10.2.3-00.2.2-00.2.1-00.1.1-00.1.0-00.0.3-10.0.3-00.0.1-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install agat

and update with:

conda update agat

or use the docker container:

docker pull quay.io/biocontainers/agat:<tag>

(see agat/tags for valid values for <tag>)

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