recipe agfusion

Python package to annotate and visualize gene fusions.

Homepage:

https://github.com/murphycj/AGFusion

License:

MIT / MIT

Recipe:

/agfusion/meta.yaml

Links:

doi: 10.1101/080903

package agfusion

versions:

1.252-1,  1.252-0,  1.251-0,  1.231-0,  1.23-0,  1.4.3-0,  1.4.1-0,  1.2-2,  1.2-0, 

1.252-1,  1.252-0,  1.251-0,  1.231-0,  1.23-0,  1.4.3-0,  1.4.1-0,  1.2-2,  1.2-0,  1.0-0

depends biopython:

>=1.67

depends future:

>=0.16.0

depends matplotlib:

>=1.5.0

depends nose2:

>=0.6.5

depends pandas:

>=0.18.1

depends pyensembl:

>=1.1.0

depends python:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install agfusion

and update with::

   mamba update agfusion

To create a new environment, run:

mamba create --name myenvname agfusion

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/agfusion:<tag>

(see `agfusion/tags`_ for valid values for ``<tag>``)

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