recipe albatradis

Comparative TraDIS analysis

Homepage:

https://github.com/quadram-institute-bioscience/albatradis

License:

GPL3 / GNU General Public License v3 (GPLv3)

Recipe:

/albatradis/meta.yaml

package albatradis

versions:

1.0.4-4,  1.0.4-3,  1.0.4-2,  1.0.4-1,  1.0.4-0,  1.0.3-0,  1.0.2-0,  1.0.1-0,  1.0.0-3, 

1.0.4-4,  1.0.4-3,  1.0.4-2,  1.0.4-1,  1.0.4-0,  1.0.3-0,  1.0.2-0,  1.0.1-0,  1.0.0-3,  1.0.0-2,  1.0.0-1,  1.0.0-0,  0.0.5-4

depends biopython:

>=1.68

depends biotradis:

>=1.4.5

depends cython:

depends dendropy:

depends graphviz:

depends libgcc-ng:

>=12

depends numpy:

depends pandas:

depends pyfastaq:

>=3.12.0

depends python:

>=3.10,<3.11.0a0

depends python-graphviz:

depends python_abi:

3.10.* *_cp310

depends scipy:

depends seaborn:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install albatradis

and update with::

   mamba update albatradis

To create a new environment, run:

mamba create --name myenvname albatradis

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/albatradis:<tag>

(see `albatradis/tags`_ for valid values for ``<tag>``)

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