recipe alder

The ALDER software computes the weighted linkage disequilibrium (LD) statistic for making inference about population admixture

Homepage:

http://cb.csail.mit.edu/cb/alder/

License:

Custom OSS

Recipe:

/alder/meta.yaml

Links:

biotools: alder, doi: 10.1534/genetics.112.147330

package alder

(downloads) docker_alder

versions:

1.03-6,  1.03-5,  1.03-4,  1.03-3,  1.03-2,  1.03-1,  1.03-0

depends _openmp_mutex:

>=4.5

depends fftw:

>=3.3.10,<4.0a0

depends libgcc-ng:

>=12

depends liblapack:

>=3.9.0,<4.0a0

depends libstdcxx-ng:

>=12

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install alder

and update with::

   mamba update alder

To create a new environment, run:

mamba create --name myenvname alder

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/alder:<tag>

(see `alder/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/alder/README.html)