recipe allelecodes

Allele Code Assignment Algorithm for cgMLST schemes

Homepage:

https://github.com/ncezid-biome/AlleleCodes

License:

GPL / GPL-3.0

Recipe:

/allelecodes/meta.yaml

This tool assigns nearest-neighbor hierarchical codes to allele profiles using cgMLST schemes, as used in public health genomics.

package allelecodes

(downloads) docker_allelecodes

versions:

2.1-0

depends python:

>=3.13,<3.14.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install allelecodes

and update with::

   mamba update allelecodes

To create a new environment, run:

mamba create --name myenvname allelecodes

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/allelecodes:<tag>

(see `allelecodes/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/allelecodes/README.html)