recipe amap

AMAP is a multiple sequence alignment program based on sequence annealing.

Homepage:

https://web.archive.org/web/20060902044446/http://bio.math.berkeley.edu/amap/

Developer docs:

https://github.com/mes5k/amap-align

License:

GPL-2

Recipe:

/amap/meta.yaml

Links:

doi: 10.1093/bioinformatics/btl311

package amap

(downloads) docker_amap

versions:

2.2-4,  2.2-3,  2.2-2,  2.2-1,  2.2-0

depends blast:

depends libcxx:

>=15.0.7

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install amap

and update with::

   mamba update amap

To create a new environment, run:

mamba create --name myenvname amap

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/amap:<tag>

(see `amap/tags`_ for valid values for ``<tag>``)

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Link to this page

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