recipe amdirt

AMDirT: AncientMetagenomeDir Toolkit

Homepage:

https://github.com/SPAAM-community/AMDirT

License:

GPL3 / GPL-3.0-or-later

Recipe:

/amdirt/meta.yaml

package amdirt

versions:

1.6.2-0,  1.6.1-1,  1.6.1-0,  1.6.0-0,  1.5.0-1,  1.5.0-0,  1.4.6-0,  1.4.5-0,  1.4.4-0, 

1.6.2-0,  1.6.1-1,  1.6.1-0,  1.6.0-0,  1.5.0-1,  1.5.0-0,  1.4.6-0,  1.4.5-0,  1.4.4-0,  1.4.3-0

depends click:

depends colorlog:

depends defusedxml:

depends jsonschema:

depends numpy:

depends pandas:

depends python:

>=3.9

depends requests:

depends rich:

depends streamlit:

<=1.35.0

depends streamlit-aggrid:

<=0.3.5

depends tabulate:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install amdirt

and update with::

   mamba update amdirt

To create a new environment, run:

mamba create --name myenvname amdirt

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/amdirt:<tag>

(see `amdirt/tags`_ for valid values for ``<tag>``)

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