recipe aminoextract

AminoExtract is an application to extract aminoacid sequences from a fasta file based on a GFF.

Homepage:

https://pypi.org/project/AminoExtract/

Developer docs:

https://github.com/RIVM-bioinformatics/AminoExtract

License:

MIT / MIT

Recipe:

/aminoextract/meta.yaml

package aminoextract

versions:

0.3.1-0,  0.3.0-0,  0.2.1-0

depends biopython:

>=1.79

depends pandas:

depends python:

>=3.10

depends python-magic:

0.4.*

depends rich:

13.*

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install aminoextract

and update with::

   mamba update aminoextract

To create a new environment, run:

mamba create --name myenvname aminoextract

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/aminoextract:<tag>

(see `aminoextract/tags`_ for valid values for ``<tag>``)

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