recipe amplisim

Plain simple amplicon sequence simulator for in-silico genomic sequencing assays.



Apache License 2.0



package amplisim

(downloads) docker_amplisim



depends bzip2:


depends libcurl:


depends libdeflate:


depends libgcc-ng:


depends libstdcxx-ng:


depends libzlib:


depends xz:


depends zlib:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install amplisim

and update with::

   mamba update amplisim

To create a new environment, run:

mamba create --name myenvname amplisim

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `amplisim/tags`_ for valid values for ``<tag>``)

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