recipe amptk

AMPtk: Amplicon tool kit for processing high throughput amplicon sequencing data.

Homepage:

https://github.com/nextgenusfs/amptk

Documentation:

http://amptk.readthedocs.io/

License:

BSD / BSD-2

Recipe:

/amptk/meta.yaml

Links:

doi: 10.7717/peerj.4925

package amptk

Versions:

1.5.5-0,  1.5.4-0,  1.5.3-0,  1.5.2-0,  1.5.1-1,  1.5.1-0,  1.5.0-0,  1.4.2-1,  1.4.2-0, 

1.5.5-0,  1.5.4-0,  1.5.3-0,  1.5.2-0,  1.5.1-1,  1.5.1-0,  1.5.0-0,  1.4.2-1,  1.4.2-0,  1.4.1-0,  1.4.0-0,  1.3.0-0,  1.2.4-1,  1.2.4-0,  1.2.2-0,  1.2.0-0,  1.1.3-0

Depends:

• bioconductor-dada2 >=1.12.1

• bioconductor-phyloseq

• biom-format

• biopython

• distro

• fasttree

• mafft

• matplotlib-base

• minimap2

• natsort

• numpy

• pandas

• pigz

• psutil

• pyfastx >=0.8.0

• python

• python-edlib >=1.2.1

• r-base

• r-dt

• r-htmltools

• r-plotly

• requests

• seaborn

• vsearch >=2.15.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install amptk

and update with:

conda update amptk

or use the docker container:

docker pull quay.io/biocontainers/amptk:<tag>

(see amptk/tags for valid values for <tag>)

Download stats

Link to this page

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