recipe ananse

ANANSE: ANalysis Algorithm for Networks Specified by Enhancers - Prediction of key transcription factors in cell fate determination using enhancer networks

Homepage:

https://github.com/vanheeringen-lab/ANANSE

License:

MIT / MIT License

Recipe:

/ananse/meta.yaml

Links:

biotools: ananse

package ananse

Versions:

0.4.1-0,  0.4.0-1,  0.4.0-0,  0.3.0-0,  0.2.2-1,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.7-0, 

0.4.1-0,  0.4.0-1,  0.4.0-0,  0.3.0-0,  0.2.2-1,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.7-0,  0.1.5-0,  0.1.4-0,  0.1.3-0,  0.1.1-0,  v0.1.2-0

Depends:

• adjusttext

• dask

• genomepy >=0.14.0

• gimmemotifs-minimal >=0.18.0

• loguru

• matplotlib-base >=3.3

• networkx

• numpy >=1.6

• openpyxl

• pandas

• pybedtools

• pydot >=1.4.1

• pygraphviz >=1.7

• pyranges

• pytables

• python >=3.7

• scikit-learn

• scipy >=1.9

• seaborn-base

• tqdm

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ananse

and update with:

conda update ananse

or use the docker container:

docker pull quay.io/biocontainers/ananse:<tag>

(see ananse/tags for valid values for <tag>)

Download stats

Link to this page

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