recipe ananse

ANANSE: ANalysis Algorithm for Networks Specified by Enhancers - Prediction of key transcription factors in cell fate determination using enhancer networks



MIT / MIT License




biotools: ananse

package ananse

(downloads) docker_ananse



depends adjusttext:

depends dask:


depends genomepy:


depends gimmemotifs-minimal:


depends loguru:

depends matplotlib-base:


depends networkx:

depends numpy:


depends openpyxl:

depends pandas:


depends pybedtools:

depends pydot:


depends pygraphviz:


depends pyranges:

depends pytables:

depends python:


depends scikit-learn:

depends scipy:


depends seaborn-base:

depends tqdm:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ananse

and update with::

   mamba update ananse

To create a new environment, run:

mamba create --name myenvname ananse

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `ananse/tags`_ for valid values for ``<tag>``)

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