recipe annosine2

AnnoSINE_v2 - SINE Annotation Tool for Plant and Animal Genomes






package annosine2

(downloads) docker_annosine2



depends cd-hit:

depends cycler:

depends hmmer:

depends irf:

depends kiwisolver:

depends matplotlib-base:

depends minimap2:

depends nodejs:

depends numpy:

depends pandas:

depends pillow:

depends pyparsing:

depends python:

depends python-dateutil:

depends repeatmasker:

depends seqtk:

depends six:

depends trf:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install annosine2

and update with::

   mamba update annosine2

To create a new environment, run:

mamba create --name myenvname annosine2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `annosine2/tags`_ for valid values for ``<tag>``)

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