recipe annotsv

Annotation and Ranking of Structural Variation

Homepage:

https://github.com/lgmgeo/AnnotSV

License:

GPL3 / GPL-3.0-only

Recipe:

/annotsv/meta.yaml

package annotsv

versions:

3.4.4-0,  3.4.3-0,  3.4.2-0,  3.4.1-1,  3.4.1-0,  3.4-1,  3.4-0,  3.3.9-0,  3.3.8-0, 

3.4.4-0,  3.4.3-0,  3.4.2-0,  3.4.1-1,  3.4.1-0,  3.4-1,  3.4-0,  3.3.9-0,  3.3.8-0,  3.3.7-0,  3.3.6-0,  3.3.5-0,  3.3.4-1,  3.3.4-0

depends appdirs:

depends bcftools:

>=1.10

depends bedtools:

>=2.25

depends coreutils:

depends curl:

depends git:

depends make:

depends natsort:

>=7.1.1

depends openjdk:

>=8

depends pandas:

>=1.5.2

depends polars:

>=0.16.5

depends pyfaidx:

>=0.7.1

depends python:

>=3.8

depends tk:

>=8.5

depends tqdm:

>=4.64.1

depends unzip:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install annotsv

and update with::

   mamba update annotsv

To create a new environment, run:

mamba create --name myenvname annotsv

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/annotsv:<tag>

(see `annotsv/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/annotsv/README.html)