recipe arborator

Arborator: Simplifying operationalized pathogen surveillance and outbreak detection

Homepage:

https://pypi.org/project/arborator/

Developer docs:

https://github.com/phac-nml/arborator

License:

Apache-2.0

Recipe:

/arborator/meta.yaml

package arborator

(downloads) docker_arborator

versions:

1.0.0-1,  1.0.0-0

depends genomic_address_service:

depends numba:

0.57.1

depends numpy:

depends pandas:

2.0.2

depends profile_dists:

depends psutil:

depends pyarrow:

12.0.0

depends pytables:

depends python:

>=3.8,<3.10

depends scipy:

>=1.0.0

depends six:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install arborator

and update with::

   mamba update arborator

To create a new environment, run:

mamba create --name myenvname arborator

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/arborator:<tag>

(see `arborator/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/arborator/README.html)