recipe arborist

Arborist is a tool to rank SNV phylogenies inferred from bulk DNA sequencing via scDNA-seq data

Homepage:

https://github.com/VanLoo-lab/Arborist

License:

BSD-3-Clause

Recipe:

/arborist/meta.yaml

package arborist

versions:

1.0.0-0

depends networkx:

>=3.6

depends numba:

>=0.61,<0.62

depends numpy:

>=1.26

depends pandas:

>=1.3,<3.0

depends pygraphviz:

depends python:

>=3.7

depends scipy:

>=1.7

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install arborist

and update with::

   mamba update arborist

To create a new environment, run:

mamba create --name myenvname arborist

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/arborist:<tag>

(see `arborist/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/arborist/README.html)