recipe arcas-hla

high resolution HLA typing from RNA seq

Homepage:

https://github.com/RabadanLab/arcasHLA

License:

GPL-3.0

Recipe:

/arcas-hla/meta.yaml

Links:

doi: 10.1093/bioinformatics/btz474

arcasHLA performs high resolution genotyping for HLA class I and class II genes from RNA sequencing, supporting both paired and single-end samples.

package arcas-hla

Versions:

0.5.0-1,  0.5.0-0,  0.4.0-0,  0.3.0-0,  0.2.5-0,  0.2.0-1,  0.2.0-0

Depends:

• bedtools >=2.27.1

• biopython

• coreutils

• git

• git-lfs

• kallisto >=0.44.0

• numpy

• pandas

• pigz

• python >=3.6.1

• samtools >=1.9

• scipy

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install arcas-hla

and update with:

conda update arcas-hla

or use the docker container:

docker pull quay.io/biocontainers/arcas-hla:<tag>

(see arcas-hla/tags for valid values for <tag>)

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