recipe arcs

Scaffolding genome sequence assemblies using linked or long reads

Homepage:

https://github.com/bcgsc/arcs

License:

GPL3 / GPL-3.0-or-later

Recipe:

/arcs/meta.yaml

package arcs

versions:

1.2.8-1,  1.2.8-0,  1.2.7-2,  1.2.7-1,  1.2.7-0,  1.2.6-0,  1.2.5-1,  1.2.5-0,  1.2.4-1, 

1.2.8-1,  1.2.8-0,  1.2.7-2,  1.2.7-1,  1.2.7-0,  1.2.6-0,  1.2.5-1,  1.2.5-0,  1.2.4-1,  1.2.4-0,  1.2.3-1,  1.2.3-0,  1.2.2-0,  1.2.1-2,  1.2.1-1,  1.2.1-0,  1.2.0-0,  1.1.1-0,  1.1.0-0

depends btllib:

>=1.7.3,<2.0a0

depends libcxx:

>=18

depends libzlib:

>=1.2.13,<2.0a0

depends llvm-openmp:

>=18.1.8

depends make:

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install arcs

and update with::

   mamba update arcs

To create a new environment, run:

mamba create --name myenvname arcs

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/arcs:<tag>

(see `arcs/tags`_ for valid values for ``<tag>``)

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