recipe argnorm

Normalize antibiotic resistance genes (ARGs) abundance tables (e.g., from metagenomics) by using the ARO ontology (developed by CARD).

Homepage:

https://github.com/BigDataBiology/argNorm

Documentation:

https://argnorm.readthedocs.io/en/latest/

License:

MIT / MIT

Recipe:

/argnorm/meta.yaml

package argnorm

(downloads) docker_argnorm

versions:

0.6.0-0,  0.5.0-0,  0.4.0-0,  0.3.0-0,  0.2.0-1,  0.2.0-0

depends pandas:

depends pronto:

>=2.5.6

depends pytest:

depends python:

>=3.7

depends setuptools:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install argnorm

and update with::

   mamba update argnorm

To create a new environment, run:

mamba create --name myenvname argnorm

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/argnorm:<tag>

(see `argnorm/tags`_ for valid values for ``<tag>``)

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Link to this page

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