recipe artemis

A set of Java genome visualization tools including the Artemis genome browser & annotation tool, ACT DNA sequence comparison viewer, DNA Plotter image generation tool and the BamView BAM/CRAM file viewer.

Homepage:

http://sanger-pathogens.github.io/Artemis/

License:

GPL / GPL-3.0

Recipe:

/artemis/meta.yaml

Links:

biotools: artemis

package artemis

(downloads) docker_artemis

versions:

18.2.0-0,  18.1.0-1,  18.1.0-0,  18.0.3-0,  18.0.2-0,  18.0.1-0

depends openjdk:

>=9

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install artemis

and update with::

   mamba update artemis

To create a new environment, run:

mamba create --name myenvname artemis

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/artemis:<tag>

(see `artemis/tags`_ for valid values for ``<tag>``)

Notes

The applications can be run using the following commands: art, act, dnaplotter or bamview

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/artemis/README.html)