- recipe artic-tools
A set of tools for working with the ARTIC bioinformatic pipeline.
- package artic-tools¶
- depends boost-cpp:
- depends bzip2:
- depends htslib:
- depends libcurl:
- depends libgcc-ng:
- depends libstdcxx-ng:
- depends libzlib:
- depends zlib:
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install artic-tools and update with:: mamba update artic-tools
To create a new environment, run:
mamba create --name myenvname artic-tools
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/artic-tools:<tag> (see `artic-tools/tags`_ for valid values for ``<tag>``)