recipe artic-tools

A set of tools for working with the ARTIC bioinformatic pipeline.

Homepage:

https://github.com/will-rowe/artic-tools

License:

MIT

Recipe:

/artic-tools/meta.yaml

package artic-tools

versions:

0.3.1-5,  0.3.1-4,  0.3.1-3,  0.3.1-2,  0.3.1-1,  0.3.1-0,  0.3.0-0,  0.2.6-0,  0.2.5-0, 

0.3.1-5,  0.3.1-4,  0.3.1-3,  0.3.1-2,  0.3.1-1,  0.3.1-0,  0.3.0-0,  0.2.6-0,  0.2.5-0,  0.2.4-0,  0.2.3-0,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.2-0,  0.1.1-0

depends boost-cpp:

>=1.78.0,<1.78.1.0a0

depends bzip2:

>=1.0.8,<2.0a0

depends htslib:

>=1.17,<1.19.0a0

depends libcurl:

>=8.0.1,<9.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install artic-tools

and update with::

   mamba update artic-tools

To create a new environment, run:

mamba create --name myenvname artic-tools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/artic-tools:<tag>

(see `artic-tools/tags`_ for valid values for ``<tag>``)

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Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/artic-tools/README.html)