recipe asgal

A graph aligner

Homepage:

https://asgal.algolab.eu/

License:

GPL-3.0-or-later

Recipe:

/asgal/meta.yaml

Links:

biotools: asgal

package asgal

versions:

1.1.8-2,  1.1.8-1,  1.1.8-0

depends biopython:

depends gffutils:

>=0.13,<0.14.0a0

depends lemon:

>=1.3.1,<1.3.2.0a0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends pandas:

depends pysam:

>=0.22.1,<0.23.0a0

depends python_abi:

3.12.* *_cp312

depends salmon:

>=1.10.3,<2.0a0

depends salmon:

>=1.9.0

depends samtools:

>=1.21,<2.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install asgal

and update with::

   mamba update asgal

To create a new environment, run:

mamba create --name myenvname asgal

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/asgal:<tag>

(see `asgal/tags`_ for valid values for ``<tag>``)

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