recipe assemblerflow

A Nextflow pipeline assembler for genomics. Pick your modules. Assemble them. Run the pipeline.

Homepage:

https://github.com/ODiogoSilva/assemblerflow

Documentation:

http://assemblerflow.readthedocs.io/en/latest/

Developer docs:

http://assemblerflow.readthedocs.io/en/latest/

License:

GPL3 / GPL3

Recipe:

/assemblerflow/meta.yaml

package assemblerflow

(downloads) docker_assemblerflow

versions:

1.1.0.post3-2,  1.1.0.post3-1,  1.1.0.post3-0,  1.1.0.post1-0,  1.0.1-0

depends argparse:

depends jinja2:

depends nextflow:

>=0.27

depends python:

>=3

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install assemblerflow

and update with::

   mamba update assemblerflow

To create a new environment, run:

mamba create --name myenvname assemblerflow

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/assemblerflow:<tag>

(see `assemblerflow/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/assemblerflow/README.html)