recipe assemblerflow

A Nextflow pipeline assembler for genomics. Pick your modules. Assemble them. Run the pipeline.

Homepage

https://github.com/ODiogoSilva/assemblerflow

Documentation

http://assemblerflow.readthedocs.io/en/latest/

Developer docs

http://assemblerflow.readthedocs.io/en/latest/

License

GPL3 / GPL3

Recipe

/assemblerflow/meta.yaml

package assemblerflow

(downloads) docker_assemblerflow

Versions

1.1.0.post3-1, 1.1.0.post3-0, 1.1.0.post1-0, 1.0.1-0

Depends argparse

Depends jinja2

Depends nextflow

>=0.27

Depends python

>=3.5,<3.6.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install assemblerflow

and update with:

conda update assemblerflow

or use the docker container:

docker pull quay.io/biocontainers/assemblerflow:<tag>

(see assemblerflow/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/assemblerflow/README.html)