recipe atactk

A toolkit for working with ATAC-seq data.

Homepage

http://theparkerlab.org/

License

GPL / GPL-3.0-or-later

Recipe

/atactk/meta.yaml

package atactk

(downloads) docker_atactk

Versions

0.1.6-1, 0.1.6-0

Depends pysam

Depends python

>=2.7,<2.8.0a0

Depends python-levenshtein

Depends r-base

Depends r-ggplot2

Depends r-gtools

Depends r-rcolorbrewer

Depends sexpdata

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install atactk

and update with:

conda update atactk

or use the docker container:

docker pull quay.io/biocontainers/atactk:<tag>

(see atactk/tags for valid values for <tag>)

Notes

Adds 3 scripts, namely “trim_adapters”, “make_cut_matrix” and “plot_aggregate_matrix.R”