recipe athena_meta

Athena read cloud assembler for metagenomes

Homepage:

https://github.com/abishara/athena_meta/

License:

MIT

Recipe:

/athena_meta/meta.yaml

package athena_meta

versions:

1.3-1,  1.3-0,  1.2-0

depends bwa:

0.7.*

depends bx-python:

0.8.*

depends flye:

2.3.1.*

depends htslib:

1.9.*

depends idba_subasm:

1.1.3a1.*

depends ipython-cluster-helper:

0.6.*

depends numpy:

1.11.*

depends pysam:

0.15.*

depends python:

<3

depends samtools:

1.9.*

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install athena_meta

and update with::

   mamba update athena_meta

To create a new environment, run:

mamba create --name myenvname athena_meta

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/athena_meta:<tag>

(see `athena_meta/tags`_ for valid values for ``<tag>``)

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